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User Guide / Tutorial:

  • How to Use UMAP
  • Basic UMAP Parameters
  • Plotting UMAP results
  • UMAP Reproducibility
  • Transforming New Data with UMAP
  • Inverse transforms
  • Parametric (neural network) Embedding
  • UMAP on sparse data
  • UMAP for Supervised Dimension Reduction and Metric Learning
  • Using UMAP for Clustering
  • Outlier detection using UMAP
  • Combining multiple UMAP models
  • Better Preserving Local Density with DensMAP
  • Improving the Separation Between Similar Classes Using a Mutual k-NN Graph
  • Document embedding using UMAP
  • Embedding to non-Euclidean spaces
  • How to use AlignedUMAP
  • AlignedUMAP for Time Varying Data
  • Precomputed k-nn
  • Performance Comparison of Dimension Reduction Implementations
  • Release Notes
  • Frequently Asked Questions

Background on UMAP:

  • How UMAP Works
  • Performance Comparison of Dimension Reduction Implementations

Examples of UMAP usage

  • Interactive Visualizations
  • Exploratory Analysis of Interesting Datasets
  • Scientific Papers

API Reference:

  • UMAP API Guide
umap
  • Docs »
  • Index
  • Edit on GitHub

Index

C | D | F | G | I | M | N | R | S | T | U

C

  • compute_membership_strengths() (in module umap.umap_)

D

  • discrete_metric_simplicial_set_intersection() (in module umap.umap_)

F

  • fast_intersection() (in module umap.umap_)
  • fast_metric_intersection() (in module umap.umap_)
  • find_ab_params() (in module umap.umap_)
  • fit() (umap.umap_.UMAP method)
  • fit_transform() (umap.umap_.UMAP method)
  • fuzzy_simplicial_set() (in module umap.umap_)

G

  • get_feature_names_out() (umap.umap_.UMAP method)

I

  • init_graph_transform() (in module umap.umap_)
  • init_transform() (in module umap.umap_)
  • inverse_transform() (umap.umap_.UMAP method)

M

  • make_epochs_per_sample() (in module umap.umap_)
  • module
    • umap.umap_

N

  • nearest_neighbors() (in module umap.umap_)

R

  • raise_disconnected_warning() (in module umap.umap_)
  • reset_local_connectivity() (in module umap.umap_)

S

  • simplicial_set_embedding() (in module umap.umap_)
  • smooth_knn_dist() (in module umap.umap_)

T

  • transform() (umap.umap_.UMAP method)

U

  • UMAP (class in umap.umap_)
  • umap.umap_
    • module

© Copyright 2018, Leland McInnes Revision 27a89123.

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