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User Guide / Tutorial:

  • How to Use UMAP
  • Basic UMAP Parameters
  • Plotting UMAP results
  • UMAP Reproducibility
  • Transforming New Data with UMAP
  • Inverse transforms
  • Parametric (neural network) Embedding
  • Transforming New Data with Parametric UMAP
  • UMAP on sparse data
  • UMAP for Supervised Dimension Reduction and Metric Learning
  • Using UMAP for Clustering
  • Outlier detection using UMAP
  • Combining multiple UMAP models
  • Better Preserving Local Density with DensMAP
  • Improving the Separation Between Similar Classes Using a Mutual k-NN Graph
  • Document embedding using UMAP
  • Embedding to non-Euclidean spaces
  • How to use AlignedUMAP
  • AlignedUMAP for Time Varying Data
  • Precomputed k-nn
  • Performance Comparison of Dimension Reduction Implementations
  • Release Notes
  • Frequently Asked Questions

Background on UMAP:

  • How UMAP Works
  • Performance Comparison of Dimension Reduction Implementations

Examples of UMAP usage

  • Interactive Visualizations
  • Exploratory Analysis of Interesting Datasets
  • Scientific Papers

API Reference:

  • UMAP API Guide
umap
  • Gallery of Examples of UMAP usage
  • View page source

Gallery of Examples of UMAP usage

A small gallery collection examples of UMAP usage. Do you have an interesting UMAP plot that uses publicly available data? Submit a pull request to have it added as an example!

UMAP on the MNIST Digits dataset

UMAP on the MNIST Digits dataset

UMAP on the MNIST Digits dataset

UMAP on the MNIST Digits dataset

UMAP as a Feature Extraction Technique for Classification

UMAP as a Feature Extraction Technique for Classification

UMAP on the Fashion MNIST Digits dataset using Datashader

UMAP on the Fashion MNIST Digits dataset using Datashader

Comparison of Dimension Reduction Techniques

Comparison of Dimension Reduction Techniques

UMAP on the Galaxy10SDSS dataset

UMAP on the Galaxy10SDSS dataset

Download all examples in Python source code: auto_examples_python.zip

Download all examples in Jupyter notebooks: auto_examples_jupyter.zip

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© Copyright 2018, Leland McInnes.

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